I tried this on another computer with Win7 x64 with multicore CPU.
Everything worked out OK. Boot was patched and succsessfully written.
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Scanning for Qualcomm HS-USB QDLoader 9008 device...
Download Port: Qualcomm HS-USB QDLoader 9008 (COM4)
Connection status: EHCI:HUB:USB 2.0 High-Speed
USB Driver: [Qualcomm Incorporated] qcusbser, version: 2.1.2.0, date: 7-8-2015
Initializing...
platform: msm8937, cpu abi: arm64-v8a
manufacturer: Xiaomi
board: msm8937, name: land
brand: Xiaomi, model: Redmi 3S
build id: MMB29M, version: 6.0.1 Marshmallow (MMB29M) (MIUI10)
build description: land-user 6.0.1 MMB29M V10.2.1.0.MALMIXM release-keys
Patching android boot...
Boot image backup saved to \backups\Xiaomi_Redmi%203Sland-user%206.0.1%20MMB29M%20V10.2.1.0.MALMIXM%20release-keysboot.img
Disabling dm-verity and forced encryption... Done.
Writing patched boot... Done.
Please, fix your software to work win Win7 x32 systems AND/OR add a possibility to save patched boot to some directory for manual write.